01 - Preheat oven to 350°F. Lightly grease a 9 x 13-inch baking dish with butter or cooking spray.
02 - Boil jumbo pasta shells in salted water according to package directions until al dente. Drain and rinse under cold water to stop cooking process. Set aside.
03 - Combine shrimp, crab, ricotta, cream cheese, Parmesan, egg, parsley, chives, garlic, salt, pepper, and red pepper flakes in large bowl. Mix until thoroughly incorporated.
04 - Melt butter in saucepan over medium heat. Whisk in flour and cook for 1 minute. Gradually whisk in milk and heavy cream until smooth, ensuring no lumps form.
05 - Bring sauce to gentle simmer, stirring frequently for 3-4 minutes until thickened. Stir in Parmesan, lemon zest, lemon juice, nutmeg, salt, and pepper. Remove from heat.
06 - Spread one-third of sauce evenly over bottom of prepared baking dish.
07 - Fill each pasta shell with approximately 2 tablespoons of seafood mixture. Arrange stuffed shells in dish, opening side up.
08 - Pour remaining sauce evenly over shells. Sprinkle mozzarella and additional Parmesan cheese across top.
09 - Cover dish with aluminum foil. Bake for 25 minutes.
10 - Remove foil and continue baking for 10 minutes until cheese is bubbly and golden brown.
11 - Let stuffed shells stand for 5 minutes before serving. Garnish with extra parsley if desired.